miRBase entry: cli-mir-30c-1

Stem-loop cli-mir-30c-1


Accession
MI0029931
Description
Columba livia cli-mir-30c-1 precursor miRNA


Sequence

guuguagcacgUGUAAACAUCCUACACUCUCAGCUgugaacugagguggCUGGGAGAGGAUUGUUUACUCCuucugccau
...((((...(.(((((((((((...(((((((((((........))))))))))))))).))))))).)...))))...

Structure
guu    cac U       -    ACA           gaa 
   guag   g GUAAACA UCCU   CUCUCAGCUgu   c
   ||||   | ||||||| ||||   |||||||||||    
   cguc   C CAUUUGU AGGA   GAGGGUCggug   u
uac    uuC U       U    ---           gag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
KB375684.1: 335113-335192 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cli-mir-30c-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cli-miR-30c-5p

Accession MIMAT0038453
Description Columba livia cli-miR-30c-5p mature miRNA
Sequence 12 - UGUAAACAUCCUACACUCUCAGCU - 35
Evidence experimental
Illumina [1]

Mature cli-miR-30c-3p

Accession MIMAT0038454
Description Columba livia cli-miR-30c-3p mature miRNA
Sequence 50 - CUGGGAGAGGAUUGUUUACUCC - 71
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196