miRBase entry: cli-mir-20b

Stem-loop cli-mir-20b

Accession

MI0029919

Description

Columba livia cli-mir-20b precursor miRNA

Sequence

uaguuuuguccuagcaguauCAAAGUGCUCAUAGUGCAGGUAGcuuugaauugaaccuACUGUAAUGUGGGCACUUAUAGUacugcuagauaaagug
...(((((((.(((((((((..(((((((((((.(((((.(((.(((.....))).)))))))).)))))))))))...))))))))))))))))..

Structure

uag       c         -CA           G     G   c   g 
   uuuuguc uagcaguau   AAGUGCUCAUA UGCAG UAG uuu a
   ||||||| |||||||||   ||||||||||| ||||| ||| ||| a
   gaaauag aucgucaUG   UUCACGGGUGU AUGUC Auc aag u
-gu       -         AUA           A     -   c   u

Annotation confidence Not enough data

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Genome context

KB375349.1: 3452099-3452195 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cli-mir-20b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-20b-5p

Accession	MIMAT0038434
Description	Columba livia cli-miR-20b-5p mature miRNA
Sequence	21 - CAAAGUGCUCAUAGUGCAGGUAG - 43
Evidence	experimental Illumina [1]

Mature cli-miR-20b-3p

Accession	MIMAT0038435
Description	Columba livia cli-miR-20b-3p mature miRNA
Sequence	59 - ACUGUAAUGUGGGCACUUAUAGU - 81
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196