miRBase entry: cli-mir-20a

Stem-loop cli-mir-20a

Accession

MI0029918

Description

Columba livia cli-mir-20a precursor miRNA

Sequence

cuuguagcacUAAAGUGCUUAUAGUGCAGGUAguguucacuaaucuACUGCAUUAUAAGCACUUAAAGUacugcuagcuguag
((.((((.(((.(((((((((((((((((.(((...........))))))))))))))))))))..))).)))).))......

Structure

------  u    c   -A                 G   uguu 
      cu guag acU  AAGUGCUUAUAGUGCAG UAg    c
      || |||| |||  ||||||||||||||||| |||    a
      ga cguc UGA  UUCACGAAUAUUACGUC Auc    c
gauguc  u    a   AA                 -   uaau

Annotation confidence Not enough data

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Genome context

KB375488.1: 2837493-2837575 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cli-mir-20a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-20a-5p

Accession	MIMAT0038432
Description	Columba livia cli-miR-20a-5p mature miRNA
Sequence	11 - UAAAGUGCUUAUAGUGCAGGUA - 32
Evidence	experimental Illumina [1]

Mature cli-miR-20a-3p

Accession	MIMAT0038433
Description	Columba livia cli-miR-20a-3p mature miRNA
Sequence	47 - ACUGCAUUAUAAGCACUUAAAGU - 69
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196