miRBase entry: cli-mir-19a

Stem-loop cli-mir-19a

Accession

MI0029915

Description

Columba livia cli-mir-19a precursor miRNA

Sequence

uuugcagucuucuGUUAGUUUUGCAUAGUUGCACUAcaagaagaguguaguUGUGCAAAUCUAUGCAAAACUGAugguggccuguuau
...((((.((.(((((((((((((((((((((((((((.......))))...))))))..))))))))))))))))).)).))))...

Structure

uuu    u  u                 --      ---    ag 
   gcag cu cuGUUAGUUUUGCAUAG  UUGCAC   UAca  a
   |||| || |||||||||||||||||  ||||||   ||||  a
   uguc gg gguAGUCAAAACGUAUC  AACGUG   augu  g
uau    c  u                 UA      Uug    ga

Annotation confidence Not enough data

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Genome context

KB375488.1: 2837667-2837754 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cli-mir-19a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-19a-5p

Accession	MIMAT0038427
Description	Columba livia cli-miR-19a-5p mature miRNA
Sequence	14 - GUUAGUUUUGCAUAGUUGCACUA - 36
Evidence	experimental Illumina [1]

Mature cli-miR-19a-3p

Accession	MIMAT0038428
Description	Columba livia cli-miR-19a-3p mature miRNA
Sequence	52 - UGUGCAAAUCUAUGCAAAACUGA - 74
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196