miRBase entry: cli-let-7f

Stem-loop cli-let-7f

Accession

MI0029890

Description

Columba livia cli-let-7f precursor miRNA

Sequence

uucucugucagagUGAGGUAGUAGAUUGUAUAGUUguaggguaguuauuuuacccuguucaggagauaaCUAUACAAUCUAUUGCCUUCCCugcggaguaaa
..(((((.(((.(.((((((((((((((((((((((((((((((.....))))))).........))))))))))))))))))))))).)))))))))....

Structure

--uu     u   a U                       ---------       u 
    cucug cag g GAGGUAGUAGAUUGUAUAGUUgu         aggguag u
    ||||| ||| | |||||||||||||||||||||||         ||||||| a
    gaggc guC C UUCCGUUAUCUAACAUAUCaaua         ucccauu u
aaau     -   - C                       gaggacuug       u

Annotation confidence Not enough data

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Genome context

KB375849.1: 22603-22704 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cli-let-7f

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-let-7f-5p

Accession	MIMAT0038385
Description	Columba livia cli-let-7f-5p mature miRNA
Sequence	14 - UGAGGUAGUAGAUUGUAUAGUU - 35
Evidence	experimental Illumina [1]

Mature cli-let-7f-3p

Accession	MIMAT0038386
Description	Columba livia cli-let-7f-3p mature miRNA
Sequence	70 - CUAUACAAUCUAUUGCCUUCCC - 91
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196