miRBase entry: cli-let-7d

Stem-loop cli-let-7d

Accession

MI0029888

Description

Columba livia cli-let-7d precursor miRNA

Sequence

uaggaAGAGGUAGUAGGUUGCAUAGUUuuagggcagggauuuugcucacaaggagguaaCUAUACAACCUGCUGCCUUUCUuagggc
(((((.((((((((((((((.((((((...((((((.....))))))..........)))))).)))))))))))))))))))....

Structure

----     A              C      -------uua      g 
    uagga GAGGUAGUAGGUUG AUAGUU          gggcag g
    ||||| |||||||||||||| ||||||          |||||| a
    auUCU UUCCGUCGUCCAAC UAUCaa          cucguu u
cggg     -              A      uggaggaaca      u

Annotation confidence Not enough data

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Genome context

KB375849.1: 23611-23697 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cli-let-7d

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-let-7d-5p

Accession	MIMAT0038381
Description	Columba livia cli-let-7d-5p mature miRNA
Sequence	6 - AGAGGUAGUAGGUUGCAUAGUU - 27
Evidence	experimental Illumina [1]

Mature cli-let-7d-3p

Accession	MIMAT0038382
Description	Columba livia cli-let-7d-3p mature miRNA
Sequence	60 - CUAUACAACCUGCUGCCUUUCU - 81
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196