miRBase entry: cli-let-7a-4

Stem-loop cli-let-7a-4

Accession

MI0029885

Description

Columba livia cli-let-7a-4 precursor miRNA

Sequence

aggUGAGGUAGUAGGUUGUAUAGUUuggugggagggauuugaucccauuucaggugauaaCUAUACAGUCUAUUGCCUUCCUuaa
(((.(((((((((((((((((((((...((((((((((...))))).)))))......))))))))))))))))))))))))...

Structure

---   U                     ---ugg     -     u 
   agg GAGGUAGUAGGUUGUAUAGUU      uggga gggau  
   ||| |||||||||||||||||||||      ||||| ||||| u
   UCC UUCCGUUAUCUGACAUAUCaa      acuuu cccua  
aau   -                     uagugg     a     g

Annotation confidence Not enough data

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Genome context

KB375734.1: 1197811-1197895 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cli-let-7a-4

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-let-7a-5p

Accession	MIMAT0038374
Description	Columba livia cli-let-7a-5p mature miRNA
Sequence	4 - UGAGGUAGUAGGUUGUAUAGUU - 25
Evidence	experimental Illumina [1]

Mature cli-let-7a-4-3p

Accession	MIMAT0038377
Description	Columba livia cli-let-7a-4-3p mature miRNA
Sequence	61 - CUAUACAGUCUAUUGCCUUCCU - 82
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196