miRBase entry: ami-mir-9604

Stem-loop ami-mir-9604


Accession
MI0029871
Description
Alligator mississippiensis ami-mir-9604 precursor miRNA


Sequence

cuggagggggagCAGCAAGGACUAGGGACCCAAGAgacagagaauuaauuucUUGGUACUCCUGCCCUUGCAGauugugaaugcccugg
....((((...(((((((((....((((.((((((((...........))))))))...))))..))))))....))).....))))..

Structure
cugg    --gga   ----      ACUA    --C        caga 
    aggg     gCA    GCAAGG    GGGA   CCAAGAga    g
    ||||     |||    ||||||    ||||   ||||||||    a
    uccc     ugu    CGUUCC    UCCU   GGUUcuuu    a
--gg    guaag   uaGA      --CG    CAU        aauu 


Annotation confidence Not enough data
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Genome context
AKHW03005996.1: 4735483-4735571 [+]

Database links

Mature ami-miR-9604-5p

Accession MIMAT0038352
Description Alligator mississippiensis ami-miR-9604-5p mature miRNA
Sequence 13 - CAGCAAGGACUAGGGACCCAAGA - 35
Evidence experimental
Illumina [1]

Mature ami-miR-9604-3p

Accession MIMAT0038353
Description Alligator mississippiensis ami-miR-9604-3p mature miRNA
Sequence 53 - UUGGUACUCCUGCCCUUGCAG - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196