miRBase entry: ami-mir-1677c

Stem-loop ami-mir-1677c


Accession
MI0029854
Description
Alligator mississippiensis ami-mir-1677c precursor miRNA


Sequence

gcagcacugugggcuUGACCCAGAACCCACUGAAGUUaagggcagagucccguuagCUUCUGUGGGCUGUAGGUCAggcuccacguguuau
..(((((.(((((((((((((((..(((((.(((((((((((......))).)))))))).))))))))..)))))))).)))))))))..

Structure
gc     u    -        --   AA     U        -   ca 
  agcac gugg gcuUGACC  CAG  CCCAC GAAGUUaa ggg  g
  ||||| |||| ||||||||  |||  ||||| |||||||| |||   
  uugug cacc cggACUGG  GUC  GGGUG CUUCgauu ccc  a
ua     -    u        AU   --     U        g   ug 


Annotation confidence Not enough data
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Genome context
AKHW03006807.1: 1818113-1818203 [+]

Database links

Mature ami-miR-1677c-5p

Accession MIMAT0038322
Description Alligator mississippiensis ami-miR-1677c-5p mature miRNA
Sequence 16 - UGACCCAGAACCCACUGAAGUU - 37
Evidence experimental
Illumina [1]

Mature ami-miR-1677c-3p

Accession MIMAT0038323
Description Alligator mississippiensis ami-miR-1677c-3p mature miRNA
Sequence 57 - CUUCUGUGGGCUGUAGGUCA - 76
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196