miRBase entry: ami-mir-460b

Stem-loop ami-mir-460b


Accession
MI0029835
Description
Alligator mississippiensis ami-mir-460b precursor miRNA


Sequence

ggacguggcucuauguugUCCUCAUUGUACAUGCUGUGUGuauauuuaugacguaCACAGCGCAUGCAAUGUGGACAgaauggagaccagcaggcuc
.....(((((((((.((((((.(((((..(((((..(((((((.........)))))))..)))))))))).)))))).)))))).)))........

Structure
---ggacg   -      g      U     UA     UG       auu 
        ugg cucuau uugUCC CAUUG  CAUGC  UGUGuau   u
        ||| |||||| |||||| |||||  |||||  |||||||   a
        acc gaggua gACAGG GUAAC  GUACG  ACACaug   u
cucggacg   a      a      U     --     CG       cag 


Annotation confidence Not enough data
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Genome context
AKHW03003879.1: 510484-510580 [+]

Database links

Mature ami-miR-460b-5p

Accession MIMAT0038293
Description Alligator mississippiensis ami-miR-460b-5p mature miRNA
Sequence 19 - UCCUCAUUGUACAUGCUGUGUG - 40
Evidence experimental
Illumina [1]

Mature ami-miR-460b-3p

Accession MIMAT0038294
Description Alligator mississippiensis ami-miR-460b-3p mature miRNA
Sequence 56 - CACAGCGCAUGCAAUGUGGACA - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196