miRBase entry: ami-mir-425

Stem-loop ami-mir-425


Accession
MI0029823
Description
Alligator mississippiensis ami-mir-425 precursor miRNA


Sequence

ggagagagauugcuuuggAAUGACACGAUCACUCCCGCUGAgcgagacgcccgacagcCAUCGGGAAUAUCGUGUCGGUCcaaagcucuuucg
...((((((..((((((((.(((((((((...(((((.((.((.............)))).)))))..))))))))).)))))))))))))).

Structure
gga      uu        A         CAC     C  A  gagac 
   gagaga  gcuuuggA UGACACGAU   UCCCG UG gc     g
   ||||||  |||||||| |||||||||   ||||| || ||     c
   cuuucu  cgaaacCU GCUGUGCUA   AGGGC AC cg     c
--g      --        G         -UA     U  -  acagc 


Annotation confidence Not enough data
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Genome context
AKHW03003150.1: 64121-64213 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ami-mir-425
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ami-miR-425-5p

Accession MIMAT0038277
Description Alligator mississippiensis ami-miR-425-5p mature miRNA
Sequence 19 - AAUGACACGAUCACUCCCGCUGA - 41
Evidence experimental
Illumina [1]

Mature ami-miR-425-3p

Accession MIMAT0038278
Description Alligator mississippiensis ami-miR-425-3p mature miRNA
Sequence 59 - CAUCGGGAAUAUCGUGUCGGUC - 80
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196