miRBase entry: ami-mir-222b

Stem-loop ami-mir-222b


Accession
MI0029808
Description
Alligator mississippiensis ami-mir-222b precursor miRNA


Sequence

gauguaauugggUGCUCAGUAGUCGGUGUAGAAUCugucugacauugauaccaacAGCUACAUCUGAUUACUGGGUCACuaauugcaucaucaa
(((((((((((..((((((((((((((((((...((((.((..........))))))))))).)))))))))))))..))))))))))).....

Structure
-----           gU             -     AAU    c  acau 
     gauguaauugg  GCUCAGUAGUCGG UGUAG   Cugu ug    u
     |||||||||||  ||||||||||||| |||||   |||| ||     
     cuacguuaauC  UGGGUCAUUAGUC ACAUC   GAca ac    g
aacua           AC             U     ---    -  caua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
AKHW03000635.1: 5891717-5891810 [+]

Database links

Mature ami-miR-222b-5p

Accession MIMAT0038256
Description Alligator mississippiensis ami-miR-222b-5p mature miRNA
Sequence 13 - UGCUCAGUAGUCGGUGUAGAAUC - 35
Evidence experimental
Illumina [1]

Mature ami-miR-222b-3p

Accession MIMAT0038257
Description Alligator mississippiensis ami-miR-222b-3p mature miRNA
Sequence 56 - AGCUACAUCUGAUUACUGGGUCAC - 79
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196