Stem-loop ami-mir-222a

Accession

MI0029807

Description

Alligator mississippiensis ami-mir-222a precursor miRNA

Sequence

uaguugcccaucaauCGCUCAGUAGUCAGUGUAGAUUCuguuuuuacaaucagcAGCUACAUCUGGCUACUGGGUCUCugaugacaucuuguag
........(((((...((((((((((((((((((...(((..........)))...))))).)))))))))))))...)))))...........

Structure

---uaguugcc     auC             -     AUU   uuuu 
           cauca   GCUCAGUAGUCAG UGUAG   Cug    u
           |||||   ||||||||||||| |||||   |||     
           guagu   UGGGUCAUCGGUC ACAUC   gac    a
gauguucuaca     CUC             U     GAc   uaac 

Annotation confidence Not enough data

Genome context

AKHW03002379.1: 2575733-2575826 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ami-mir-222a

Mature ami-miR-222a-5p

• Accession: MIMAT0038254
• Description: Alligator mississippiensis ami-miR-222a-5p mature miRNA
• Sequence: 16 - CGCUCAGUAGUCAGUGUAGAUUC - 38
• Evidence: experimental ; Illumina [1]

Mature ami-miR-222a-3p

• Accession: MIMAT0038255
• Description: Alligator mississippiensis ami-miR-222a-3p mature miRNA
• Sequence: 55 - AGCUACAUCUGGCUACUGGGUCUC - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196