Stem-loop sequence ami-mir-215

Accession

MI0029798 (change log)

Description

Alligator mississippiensis miR-215 stem-loop

Stem-loop

   aacugu         a a  a     -   u        ugu  au 
5'       ugugcagga a ug ccuau gaa ugacagac   gu  u
         ||||||||| | || ||||| ||| ||||||||   ||  c
3'       acacgucuu u ac ggaug cuu acugucug   cg  u
   -cuucc         a a  c     u   u        -uu  aa 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (ASM28112v4; GCA_000281125.4): AKHW03001146.1: 13838061-13838152 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ami-mir-215

• ami-mir-194-1: AKHW03001146.1: 13837746-13837839 [+]
• ami-mir-215: AKHW03001146.1: 13838061-13838152 [+]

Database links

• miRBase Tracker:MI0029798

Mature sequence ami-miR-215-5p

• Accession: MIMAT0038240
• Sequence: 18 - augaccuaugaauugacagac - 38
• Evidence: experimental; Illumina [1]

Mature sequence ami-miR-215-3p

• Accession: MIMAT0038241
• Sequence: 56 - ucugucauuucuguaggccaau - 77
• Evidence: experimental; Illumina [1]

References

1. PMID:24798503 "Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles" Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ Evol Dev. 16:189-196(2014).