miRBase entry: ami-mir-214

Stem-loop ami-mir-214


Accession
MI0029797
Description
Alligator mississippiensis ami-mir-214 precursor miRNA


Sequence

cggaguugucaugugucUGCCUGUCUACACUUGCUGUGCagaacauccacucaccuguACAGCAGGCACAGACAGGCAGucacaugacaaccc
.((.(((((((((((.((((((((((...((((((((((((.............))))))))))))...)))))))))).)))))))))))))

Structure
c  a           u          ACA            aacau 
 gg guugucaugug cUGCCUGUCU   CUUGCUGUGCag     c
 || ||||||||||| ||||||||||   ||||||||||||     c
 cc caacaguacac GACGGACAGA   GGACGACAuguc     a
-  -           u          CAC            cacuc 


Annotation confidence Not enough data
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Genome context
AKHW03002184.1: 575707-575799 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ami-mir-214
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ami-miR-214-5p

Accession MIMAT0038238
Description Alligator mississippiensis ami-miR-214-5p mature miRNA
Sequence 18 - UGCCUGUCUACACUUGCUGUGC - 39
Evidence experimental
Illumina [1]

Mature ami-miR-214-3p

Accession MIMAT0038239
Description Alligator mississippiensis ami-miR-214-3p mature miRNA
Sequence 59 - ACAGCAGGCACAGACAGGCAG - 79
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196