miRBase entry: ami-mir-200a

Stem-loop ami-mir-200a


Accession
MI0029785
Description
Alligator mississippiensis ami-mir-200a precursor miRNA


Sequence

ugguccucugugggCAUCUUACUAGACAGUGCUGGauauuuuggaucuacucUAACACUGUCUGGUAACGAUGUuuaaagggugaaccaaa
(((((((((.(((((((((((((((((((((.((((..............)))).))))))))))))).)))))))).)))).).))))..

Structure
--    - -    g        -             C    uauuuu 
  uggu c cucu ugggCAUC UUACUAGACAGUG UGGa      g
  |||| | |||| |||||||| ||||||||||||| ||||       
  acca g ggga auuUGUAG AAUGGUCUGUCAC AUcu      g
aa    a u    a        C             A    caucua 


Annotation confidence Not enough data
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Genome context
AKHW03004073.1: 9499070-9499160 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ami-mir-200a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ami-miR-200a-5p

Accession MIMAT0038218
Description Alligator mississippiensis ami-miR-200a-5p mature miRNA
Sequence 15 - CAUCUUACUAGACAGUGCUGG - 35
Evidence experimental
Illumina [1]

Mature ami-miR-200a-3p

Accession MIMAT0038219
Description Alligator mississippiensis ami-miR-200a-3p mature miRNA
Sequence 53 - UAACACUGUCUGGUAACGAUGU - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196