miRBase entry: ami-mir-194-2

Stem-loop ami-mir-194-2

Accession

MI0029778

Description

Alligator mississippiensis ami-mir-194-2 precursor miRNA

Sequence

cgcugguguccauccgcUGUAACAGCAACUCCAUGUGGgagggguccguggucCCCGUGGGGCUGCUGUUAUUCUggacgggcaccgggagc
..(((((((((.((((..(((((((((.(((((((.((((...........))))))))))).)))))))))..)))).)))))))))....

Structure

--cg         a    cU         A       U    gggg 
    cuggugucc uccg  GUAACAGCA CUCCAUG GGga    u
    ||||||||| ||||  ||||||||| ||||||| ||||    c
    ggccacggg aggU  UAUUGUCGU GGGGUGC CCcu    c
cgag         c    CU         C       -    ggug

Annotation confidence Not enough data

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Genome context

AKHW03006887.1: 24474-24565 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ami-mir-194-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ami-miR-194-5p

Accession	MIMAT0038212
Description	Alligator mississippiensis ami-miR-194-5p mature miRNA
Sequence	18 - UGUAACAGCAACUCCAUGUGG - 38
Evidence	experimental Illumina [1]

Mature ami-miR-194-2-3p

Accession	MIMAT0038214
Description	Alligator mississippiensis ami-miR-194-2-3p mature miRNA
Sequence	54 - CCCGUGGGGCUGCUGUUAUUCU - 75
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196