Stem-loop sequence ami-mir-194-1

Accession

MI0029777 (change log)

Description

Alligator mississippiensis miR-194-1 stem-loop

Stem-loop

   ----acca c   -a  u     u         a      g    cuac 
5'         g agu  cu ucaaa guaacagca cuccau ugga    g
           | |||  || ||||| ||||||||| |||||| ||||    c
3'         c uca  ga aguuu cauugucgu gaggug accu    u
   uacagaca -   cc  c     u         a      -    ucag 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (ASM28112v4; GCA_000281125.4): AKHW03001146.1: 13837746-13837839 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ami-mir-194-1

• ami-mir-194-1: AKHW03001146.1: 13837746-13837839 [+]
• ami-mir-215: AKHW03001146.1: 13838061-13838152 [+]

Database links

• miRBase Tracker:MI0029777

Mature sequence ami-miR-194-5p

• Accession: MIMAT0038212
• Sequence: 19 - uguaacagcaacuccaugugg - 39
• Evidence: experimental; Illumina [1]

Mature sequence ami-miR-194-3p

• Accession: MIMAT0038213
• Sequence: 53 - ccaguggagaugcuguuacuuu - 74
• Evidence: experimental; Illumina [1]

References

1. PMID:24798503 "Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles" Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ Evol Dev. 16:189-196(2014).