miRBase entry: ami-mir-193b

Stem-loop ami-mir-193b


Accession
MI0029776
Description
Alligator mississippiensis ami-mir-193b precursor miRNA


Sequence

aaaguugugguuccagaguCGGGGUUUUGGGGGCAAGAUGAgcuuauguuuuauccAACUGGCCCACAAAGUCCCGCUuuugguggucacuuugu
......((((..((((((.(((((((((((((.((.(((((((....).))))))....)).))).)))))))))).))))))...)))).....

Structure
aaaguu    -uu      u          -   G  ---A      - u 
      gugg   ccagag CGGGGUUUUG GGG CA    GAUGAg c u
      ||||   |||||| |||||||||| ||| ||    |||||| |  
      cacu   gguuuU GCCCUGAAAC CCC GU    cuauuu g a
-uguuu    ggu      C          A   G  CAAc      u u 


Annotation confidence Not enough data
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Genome context
AKHW03004154.1: 5490769-5490863 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ami-mir-193b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ami-miR-193b-5p

Accession MIMAT0038210
Description Alligator mississippiensis ami-miR-193b-5p mature miRNA
Sequence 20 - CGGGGUUUUGGGGGCAAGAUGA - 41
Evidence experimental
Illumina [1]

Mature ami-miR-193b-3p

Accession MIMAT0038211
Description Alligator mississippiensis ami-miR-193b-3p mature miRNA
Sequence 57 - AACUGGCCCACAAAGUCCCGCU - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196