Stem-loop ami-mir-190b

Accession

MI0029772

Description

Alligator mississippiensis ami-mir-190b precursor miRNA

Sequence

gcccaccugccucugucUGAUAUGUUUGAUAUUAGGUUGuuuuauuggaaagccaacuaaauaucaaacauauucuuacagcgccagggccccuc
((((...((.(.((((..(((((((((((((((.(((((((((.....)))).))))).))))))))))))).))..)))).).)))))).....

Structure

-----    acc  c u    cU  -             A     -    a 
     gccc   ug c cugu  GA UAUGUUUGAUAUU GGUUG uuuu u
     ||||   || | ||||  || ||||||||||||| ||||| |||| u
     cggg   ac g gaca  cu auacaaacuauaa ucaac gaaa g
cuccc    ---  c c    uu  u             a     c    g 

Annotation confidence Not enough data

Genome context

AKHW03000117.1: 46098-46192 [+]

Mature ami-miR-190b-5p

• Accession: MIMAT0038204
• Description: Alligator mississippiensis ami-miR-190b-5p mature miRNA
• Sequence: 18 - UGAUAUGUUUGAUAUUAGGUUG - 39
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196