miRBase entry: ami-mir-182

Stem-loop ami-mir-182


Accession
MI0029767
Description
Alligator mississippiensis ami-mir-182 precursor miRNA


Sequence

ggucccucucgcugucUUUGGCAAUGGUAGAACUCACACUggugagguaucaggauccggUGGUUCUAGACUUGCCAACUaccgcccgagggcacag
.(((((((..((.((..(((((((...((((((...(((((((((....)))....))))))))))))...)))))))..)).))..))))).))..

Structure
-g  -     uc  u  cU       UGG      UCA      ----   g 
  gu cccuc  gc gu  UUGGCAA   UAGAAC   CACUgg    uga g
  || |||||  || ||  |||||||   ||||||   ||||||    |||  
  ca gggag  cg ca  AACCGUU   AUCUUG   GUggcc    acu u
ga  c     cc  c  UC       CAG      ---      uagg   a 


Annotation confidence Not enough data
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Genome context
AKHW03002440.1: 28203080-28203176 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ami-mir-182
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ami-miR-182-5p

Accession MIMAT0038194
Description Alligator mississippiensis ami-miR-182-5p mature miRNA
Sequence 17 - UUUGGCAAUGGUAGAACUCACACU - 40
Evidence experimental
Illumina [1]

Mature ami-miR-182-3p

Accession MIMAT0038195
Description Alligator mississippiensis ami-miR-182-3p mature miRNA
Sequence 61 - UGGUUCUAGACUUGCCAACU - 80
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196