Stem-loop ami-mir-181a-2

Accession

MI0029762

Description

Alligator mississippiensis ami-mir-181a-2 precursor miRNA

Sequence

cagauagcuucagugAACAUUCAACGCUGUCGGUGAGUuugagcauuagaaaaaaaACCAUCGACCGUUGACUGUACCuugagguuuaucaca
..(((((((((((.(.(((.((((((..(((((((.((((..............))))))))))))))))).))).).)))))).)))))...

Structure

-ca     -      u A   U      CU       A    gagcau 
   gauag cuucag g ACA UCAACG  GUCGGUG GUuu      u
   ||||| |||||| | ||| ||||||  ||||||| ||||       
   cuauu ggaguu C UGU AGUUGC  CAGCUAC CAaa      a
aca     u      C A   C      --       -    aaaaag 

Annotation confidence Not enough data

Genome context

AKHW03004379.1: 111738-111830 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ami-mir-181a-2

Mature ami-miR-181a-5p

• Accession: MIMAT0038186
• Description: Alligator mississippiensis ami-miR-181a-5p mature miRNA
• Sequence: 16 - AACAUUCAACGCUGUCGGUGAGU - 38
• Evidence: experimental ; Illumina [1]

Mature ami-miR-181a-2-3p

• Accession: MIMAT0038188
• Description: Alligator mississippiensis ami-miR-181a-2-3p mature miRNA
• Sequence: 57 - ACCAUCGACCGUUGACUGUACC - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196