Stem-loop ami-mir-181a-1

Accession

MI0029761

Description

Alligator mississippiensis ami-mir-181a-1 precursor miRNA

Sequence

gugguugcuucagugAACAUUCAACGCUGUCGGUGAGUuuggauuuaaagugaaaACCAUCGACCGUUGAUUGUACCcuccagcuaaccauc
(((((((((..((.(.(((.((((((..(((((((.((((.............))))))))))))))))).))).).))..))).)))))).

Structure

-      -   uc  u A   U      CU       A    ggauu 
 gugguu gcu  ag g ACA UCAACG  GUCGGUG GUuu     u
 |||||| |||  || | ||| ||||||  ||||||| ||||     a
 uaccaa cga  uc C UGU AGUUGC  CAGCUAC CAaa     a
c      u   cc  C A   U      --       -    aguga 

Annotation confidence Not enough data

Genome context

AKHW03003392.1: 1539171-1539262 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ami-mir-181a-1

Mature ami-miR-181a-5p

• Accession: MIMAT0038186
• Description: Alligator mississippiensis ami-miR-181a-5p mature miRNA
• Sequence: 16 - AACAUUCAACGCUGUCGGUGAGU - 38
• Evidence: experimental ; Illumina [1]

Mature ami-miR-181a-3p

• Accession: MIMAT0038187
• Description: Alligator mississippiensis ami-miR-181a-3p mature miRNA
• Sequence: 56 - ACCAUCGACCGUUGAUUGUACC - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196