miRBase entry: ami-mir-145

Stem-loop ami-mir-145

Accession

MI0029750

Description

Alligator mississippiensis ami-mir-145 precursor miRNA

Sequence

ugcuguguccucaggGUCCAGUUUUCCCAGGAAUCCcuugggcacuguguuggggAUUCCUGGAAAUACUGUUCUUggggccguggcucag
.((((((.((((((((..((((.((.((((((((((((.(.((...)).).)))))))))))).)).)))).)))))))).))))))....

Structure

---u      u        UC    U  C            u g  a 
    gcugug ccucaggG  CAGU UU CCAGGAAUCCcu g gc  
    |||||| ||||||||  |||| || |||||||||||| | || c
    cggugc ggggUUCU  GUCA AA GGUCCUUAgggg u ug  
gacu      c        -U    U  A            u g  u

Annotation confidence Not enough data

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Genome context

AKHW03006437.1: 13478292-13478382 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ami-mir-145

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ami-miR-145-5p

Accession	MIMAT0038169
Description	Alligator mississippiensis ami-miR-145-5p mature miRNA
Sequence	16 - GUCCAGUUUUCCCAGGAAUCC - 36
Evidence	experimental Illumina [1]

Mature ami-miR-145-3p

Accession	MIMAT0038170
Description	Alligator mississippiensis ami-miR-145-3p mature miRNA
Sequence	56 - AUUCCUGGAAAUACUGUUCUU - 76
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196