miRBase entry: ami-mir-144

Stem-loop ami-mir-144


Accession
MI0029749
Description
Alligator mississippiensis ami-mir-144 precursor miRNA


Sequence

gcggggggcucugggcaGGAUAUCAUCGUAUACUGUAAGucggcuaugagacacUACAGUAUAGAUGAUGUACUAccccggccuuuccccu
..((((((((..(((.((.((((((((.(((((((((.(((........)))..))))))))))))))))).)).))).))))...)))).

Structure
gc    ---    cu   c  G        G         -A   ggc 
  gggg   ggcu  ggg aG AUAUCAUC UAUACUGUA  Guc   u
  ||||   ||||  ||| || |||||||| |||||||||  |||    
  cccc   ccgg  ccc UC UGUAGUAG AUAUGACAU  cag   a
-u    uuu    -c   A  A        -         ca   agu 


Annotation confidence Not enough data
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Genome context
AKHW03003808.1: 62842-62932 [-]

Database links

Mature ami-miR-144-5p

Accession MIMAT0038167
Description Alligator mississippiensis ami-miR-144-5p mature miRNA
Sequence 18 - GGAUAUCAUCGUAUACUGUAAG - 39
Evidence experimental
Illumina [1]

Mature ami-miR-144-3p

Accession MIMAT0038168
Description Alligator mississippiensis ami-miR-144-3p mature miRNA
Sequence 55 - UACAGUAUAGAUGAUGUACUA - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196