miRBase entry: ami-mir-143

Stem-loop ami-mir-143

Accession

MI0029748

Description

Alligator mississippiensis ami-mir-143 precursor miRNA

Sequence

augucucccagcccaaGGUGCAGUGCUGCAUCUCUGGucaguugugagucUGAGAUGAAGCACUGUAGCUCgggaagggaggaac
...((((((..(((.((.(((((((((.((((((.(((((....))).)).)))))).))))))))).)).)))..))))))...

Structure

aug      ag   a  G         G      U  -   g 
   ucuccc  ccc aG UGCAGUGCU CAUCUC GG uca u
   ||||||  ||| || ||||||||| |||||| || |||  
   ggaggg  ggg UC AUGUCACGA GUAGAG cu agu u
caa      aa   C  G         A      U  g   g

Annotation confidence Not enough data

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Genome context

AKHW03006437.1: 13479112-13479196 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ami-mir-143

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ami-miR-143-5p

Accession	MIMAT0038165
Description	Alligator mississippiensis ami-miR-143-5p mature miRNA
Sequence	17 - GGUGCAGUGCUGCAUCUCUGG - 37
Evidence	experimental Illumina [1]

Mature ami-miR-143-3p

Accession	MIMAT0038166
Description	Alligator mississippiensis ami-miR-143-3p mature miRNA
Sequence	51 - UGAGAUGAAGCACUGUAGCUC - 71
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196