miRBase entry: ami-mir-135-3

Stem-loop ami-mir-135-3


Accession
MI0029739
Description
Alligator mississippiensis ami-mir-135-3 precursor miRNA


Sequence

cccucugcuguggucUAUGGCUUUUUAUUCCUAUGUGauugcuuuuccuaacucAUGUAGGGCUAAAAGCCAUGGgcuacacagaggau
.((((((.(((((((((((((((((...((((((((((..............))))))))))..)))))))))))))))))))))))..

Structure
-c      c                 UAU          uugcuu 
  ccucug uguggucUAUGGCUUUU   UCCUAUGUGa      u
  |||||| |||||||||||||||||   ||||||||||       
  ggagac acaucgGGUACCGAAAA   GGGAUGUAcu      u
ua      -                 -UC          caaucc 


Annotation confidence Not enough data
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Genome context
AKHW03006286.1: 1169621-1169709 [+]

Database links

Mature ami-miR-135-5p

Accession MIMAT0038149
Description Alligator mississippiensis ami-miR-135-5p mature miRNA
Sequence 16 - UAUGGCUUUUUAUUCCUAUGUG - 37
Evidence experimental
Illumina [1]

Mature ami-miR-135-3-3p

Accession MIMAT0038152
Description Alligator mississippiensis ami-miR-135-3-3p mature miRNA
Sequence 55 - AUGUAGGGCUAAAAGCCAUGG - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196