miRBase entry: ami-mir-133a-3

Stem-loop ami-mir-133a-3

Accession

MI0029735

Description

Alligator mississippiensis ami-mir-133a-3 precursor miRNA

Sequence

aguguguuccuggggcugguaaaaaggaaccagaucaacuuggaacuggaUUUGGUCCCCUUCAACCAGCUGuaguggcacauaaa
.(((((((.(((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))).)))))))...

Structure

--a       c   g       aa  a  a        aacuu 
   guguguu cug ggcuggu  aa gg accagauc     g
   ||||||| ||| |||||||  || || ||||||||      
   uacacgg gau UCGACCA  UU CC UGGUUUag     g
aaa       u   G       AC  C  C        gucaa

Annotation confidence Not enough data

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Genome context

AKHW03000257.1: 2163873-2163958 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ami-mir-133a-3

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ami-miR-133a-3p

Accession	MIMAT0038147
Description	Alligator mississippiensis ami-miR-133a-3p mature miRNA
Sequence	51 - UUUGGUCCCCUUCAACCAGCUG - 72
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196