miRBase entry: ami-mir-133a-1

Stem-loop ami-mir-133a-1


Accession
MI0029733
Description
Alligator mississippiensis ami-mir-133a-1 precursor miRNA


Sequence

ccaaugcuuugcuaaAGCUGGUAAAAUGGAACCAAAUcaccuguucaauggaUUUGGUCCCCUUCAACCAGCUGuagcuaugcauugau
.((((((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...))))))..

Structure
-c      uuu    a       AA  U  A        accug 
  caaugc   gcua AGCUGGU  AA GG ACCAAAUc     u
  ||||||   |||| |||||||  || || ||||||||      
  guuacg   cgau UCGACCA  UU CC UGGUUUag     u
ua      uau    G       AC  C  C        guaac 


Annotation confidence Not enough data
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Genome context
AKHW03000230.1: 127265-127353 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ami-mir-133a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ami-miR-133a-5p

Accession MIMAT0038146
Description Alligator mississippiensis ami-miR-133a-5p mature miRNA
Sequence 16 - AGCUGGUAAAAUGGAACCAAAU - 37
Evidence experimental
Illumina [1]

Mature ami-miR-133a-3p

Accession MIMAT0038147
Description Alligator mississippiensis ami-miR-133a-3p mature miRNA
Sequence 53 - UUUGGUCCCCUUCAACCAGCUG - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196