miRBase entry: ami-mir-130c

Stem-loop ami-mir-130c


Accession
MI0029731
Description
Alligator mississippiensis ami-mir-130c precursor miRNA


Sequence

gcauagugucuguccagugcccuuuuuauguuguacuacuagugaucgugcacaaaaagcAGUGCAAUGUUAAAAGGGCAUUggccagcaauacugucu
..((((((((((.(((((((((((((.((((((((((.((.(((......)))....)).)))))))))).))))))))))))).)))..)))))))..

Structure
gc       --   u             u          a  ---a   au 
  auagugu  cug ccagugcccuuuu auguuguacu cu    gug  c
  |||||||  ||| ||||||||||||| |||||||||| ||    |||   
  ugucaua  gac ggUUACGGGAAAA UGUAACGUGA ga    cac  g
uc       ac   c             U          c  aaaa   gu 


Annotation confidence Not enough data
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Genome context
AKHW03004004.1: 14072647-14072745 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ami-mir-130c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ami-miR-130c-3p

Accession MIMAT0038143
Description Alligator mississippiensis ami-miR-130c-3p mature miRNA
Sequence 61 - AGUGCAAUGUUAAAAGGGCAUU - 82
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196