miRBase entry: ami-mir-130b

Stem-loop ami-mir-130b

Accession

MI0029730

Description

Alligator mississippiensis ami-mir-130b precursor miRNA

Sequence

guaugcuguuguccagaGCCCUUUUUCUGUUGUACUAcuggcaauuaugaugagCAGUGCAAUAUUAAAAGGGCAUuggcuggcagaaacaugacc
.....((((((.((((.((((((((..(((((((((.((.(((....)).).)).)))))))))..)))))))).)))).))))))..........

Structure

-----guaug      u    a        UC         A  g -  a 
          cuguug ccag GCCCUUUU  UGUUGUACU cu g ca u
          |||||| |||| ||||||||  ||||||||| || | ||  
          gacggu gguU CGGGAAAA  AUAACGUGA ga u gu u
ccaguacaaa      c    A        UU         C  g a  a

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

AKHW03002185.1: 25772-25867 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ami-mir-130b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ami-miR-130b-5p

Accession	MIMAT0038141
Description	Alligator mississippiensis ami-miR-130b-5p mature miRNA
Sequence	18 - GCCCUUUUUCUGUUGUACUA - 37
Evidence	experimental Illumina [1]

Mature ami-miR-130b-3p

Accession	MIMAT0038142
Description	Alligator mississippiensis ami-miR-130b-3p mature miRNA
Sequence	55 - CAGUGCAAUAUUAAAAGGGCAU - 76
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196