miRBase entry: ami-mir-125b-2

Stem-loop ami-mir-125b-2


Accession
MI0029723
Description
Alligator mississippiensis ami-mir-125b-2 precursor miRNA


Sequence

ggacuuuuccuagUCCCUGAGACCCUAACUUGUGAgguuuuuuagcaacaaucACAAGUCAGGCUCUUGGGACcuaggcggaggggaaccagc
...((((.(((((((((.((((.(((.((((((((.(((.......)))..)))))))).))).)))))))).))))).))))..........

Structure
-------gga    u     -    U    C   A        -g   uu 
          cuuu ccuag UCCC GAGA CCU ACUUGUGA  guu  u
          |||| ||||| |||| |||| ||| ||||||||  |||  u
          gagg ggauc AGGG UUCU GGA UGAACAcu  caa  a
cgaccaaggg    c     C    -    C   C        aa   cg 


Annotation confidence Not enough data
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Genome context
AKHW03006231.1: 37281652-37281744 [+]

Database links

Mature ami-miR-125b-5p

Accession MIMAT0038128
Description Alligator mississippiensis ami-miR-125b-5p mature miRNA
Sequence 14 - UCCCUGAGACCCUAACUUGUGA - 35
Evidence experimental
Illumina [1]

Mature ami-miR-125b-2-3p

Accession MIMAT0038130
Description Alligator mississippiensis ami-miR-125b-2-3p mature miRNA
Sequence 54 - ACAAGUCAGGCUCUUGGGAC - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196