miRBase entry: ami-mir-96

Stem-loop ami-mir-96


Accession
MI0029706
Description
Alligator mississippiensis ami-mir-96 precursor miRNA


Sequence

guucucugcuuggcccauUUUGGCACUAGCACAUUUUUGCUuuuguacguauacuuugagCAAUUAUGUGUAGUGCCAAUAUgggaggagauggacu
(((((((.((...(((((.(((((((((.(((((..((((((..(((....)))...))))))..)))))))))))))).))))))).))).)))).

Structure
-    -   g  ugg     U         G     UU      -uu   c 
 guuc ucu cu   cccau UUGGCACUA CACAU  UUGCUu   gua g
 |||| ||| ||   ||||| ||||||||| |||||  ||||||   |||  
 cagg aga ga   gggUA AACCGUGAU GUGUA  AACgag   cau u
u    u   g  ---     U         -     UU      uuu   a 


Annotation confidence Not enough data
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Genome context
AKHW03002440.1: 28194110-28194206 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ami-mir-96
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ami-miR-96-5p

Accession MIMAT0038106
Description Alligator mississippiensis ami-miR-96-5p mature miRNA
Sequence 19 - UUUGGCACUAGCACAUUUUUGCU - 41
Evidence experimental
Illumina [1]

Mature ami-miR-96-3p

Accession MIMAT0038107
Description Alligator mississippiensis ami-miR-96-3p mature miRNA
Sequence 61 - CAAUUAUGUGUAGUGCCAAUAU - 82
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196