miRBase entry: ami-mir-34b

Stem-loop ami-mir-34b

Accession

MI0029701

Description

Alligator mississippiensis ami-mir-34b precursor miRNA

Sequence

aguaguguuugguuuguAGGCAGUGUAGUUAGCUGAUUGugucagucccuuggcAAUCACUAACUUCACUGCCAUCaaaacaaggcacagaau
....((((((.((((...(((((((.((((((.(((((((............))))))))))))).)))))))....)))).)))))).....

Structure

-agua      g    -guA       U      C       gucag 
     guguuu guuu    GGCAGUG AGUUAG UGAUUGu     u
     |||||| ||||    ||||||| |||||| |||||||      
     cacgga caaa    CCGUCAC UCAAUC ACUAAcg     c
uaaga      a    aCUA       U      -       guucc

Annotation confidence Not enough data

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Genome context

AKHW03003120.1: 1302480-1302572 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ami-mir-34b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ami-miR-34b-5p

Accession	MIMAT0038097
Description	Alligator mississippiensis ami-miR-34b-5p mature miRNA
Sequence	18 - AGGCAGUGUAGUUAGCUGAUUG - 39
Evidence	experimental Illumina [1]

Mature ami-miR-34b-3p

Accession	MIMAT0038098
Description	Alligator mississippiensis ami-miR-34b-3p mature miRNA
Sequence	55 - AAUCACUAACUUCACUGCCAUC - 76
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196