miRBase entry: ami-mir-31

Stem-loop ami-mir-31


Accession
MI0029696
Description
Alligator mississippiensis ami-mir-31 precursor miRNA


Sequence

cagagcuagagaggAGGCAAGAUGUUGGCAUAGCUGuugaccuaagaaccUGCUAUGCCAACAUCUUGUCAUcuuucuugucuac
.(((.(.(((((((.(((((((((((((((((((.(((........)))..))))))))))))))))))).))))))).))))..

Structure
-c   g u       A                   -U   gac 
  aga c agagagg GGCAAGAUGUUGGCAUAGC  Guu   c
  ||| | ||||||| |||||||||||||||||||  |||    
  ucu g ucuuucU CUGUUCUACAACCGUAUCG  caa   u
ca   - u       A                   Uc   gaa 


Annotation confidence Not enough data
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Genome context
AKHW03006964.1: 656446-656530 [+]

Database links

Mature ami-miR-31-5p

Accession MIMAT0038088
Description Alligator mississippiensis ami-miR-31-5p mature miRNA
Sequence 15 - AGGCAAGAUGUUGGCAUAGCUG - 36
Evidence experimental
Illumina [1]

Mature ami-miR-31-3p

Accession MIMAT0038089
Description Alligator mississippiensis ami-miR-31-3p mature miRNA
Sequence 51 - UGCUAUGCCAACAUCUUGUCAU - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196