Stem-loop sequence ami-mir-30d

Accession

MI0029694 (change log)

Description

Alligator mississippiensis miR-30d stem-loop

Stem-loop

   au  g    u  u  u         ccc            u  ga 
5'   gg aguc gu gu guaaacauc   gacuggaagcug aa  g
     || |||| || || |||||||||   |||||||||||| ||   
3'   uc ucgg ca cg cguuuguag   cugacuuucgau uu  a
   --  a    u  c  u         --a            c  aa 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (ASM28112v4; GCA_000281125.4): AKHW03000629.1: 6771336-6771423 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ami-mir-30d

• ami-mir-30d: AKHW03000629.1: 6771336-6771423 [-]
• ami-mir-30b: AKHW03000629.1: 6765014-6765105 [-]

Database links

• miRBase Tracker:MI0029694

Mature sequence ami-miR-30d-5p

• Accession: MIMAT0038084
• Sequence: 16 - uguaaacauccccgacuggaagcu - 39
• Evidence: experimental; Illumina [1]

Mature sequence ami-miR-30d-3p

• Accession: MIMAT0038085
• Sequence: 56 - cuuucagucagauguuugcug - 76
• Evidence: experimental; Illumina [1]

References

1. PMID:24798503 "Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles" Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ Evol Dev. 16:189-196(2014).