miRBase entry: ami-mir-30d

Stem-loop ami-mir-30d


Accession
MI0029694
Description
Alligator mississippiensis ami-mir-30d precursor miRNA


Sequence

augggagucuguuguUGUAAACAUCCCCGACUGGAAGCUguaagagaaauucuagCUUUCAGUCAGAUGUUUGCUGccacuggcuacu
.....((((.((.((.(((((((((...((((((((((((.((......)).)))))))))))).))))))))).)).)).))))...

Structure
auggg    u  u  U         CCC            u  ga 
     aguc gu gu GUAAACAUC   GACUGGAAGCUg aa  g
     |||| || || |||||||||   |||||||||||| ||   
     ucgg ca cG CGUUUGUAG   CUGACUUUCgau uu  a
--uca    u  c  U         --A            c  aa 


Annotation confidence Not enough data
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Genome context
AKHW03000629.1: 6771336-6771423 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ami-mir-30d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ami-miR-30d-5p

Accession MIMAT0038084
Description Alligator mississippiensis ami-miR-30d-5p mature miRNA
Sequence 16 - UGUAAACAUCCCCGACUGGAAGCU - 39
Evidence experimental
Illumina [1]

Mature ami-miR-30d-3p

Accession MIMAT0038085
Description Alligator mississippiensis ami-miR-30d-3p mature miRNA
Sequence 56 - CUUUCAGUCAGAUGUUUGCUG - 76
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196