miRBase entry: ami-mir-30c-1

Stem-loop ami-mir-30c-1


Accession
MI0029692
Description
Alligator mississippiensis ami-mir-30c-1 precursor miRNA


Sequence

aucuaccaugccguagcaugUGUAAACAUCCUACACUCUCAGCugugaacucaagguggcUGGGAGAGGGUUGUUUACGCCuucugccauggucug
....((((((..((((...(((((((((.(((...(((((((((....(((...)))))))))))).))).)))))))))...))))))))))...

Structure
aucu      cc    cau         U   ACA         guga   c 
    accaug  guag   gUGUAAACA CCU   CUCUCAGCu    acu  
    ||||||  ||||   ||||||||| |||   |||||||||    ||| a
    ugguac  cguc   CGCAUUUGU GGG   GAGGGUcgg    ugg  
-guc      --    uuC         U   --A         ----   a 


Annotation confidence Not enough data
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Genome context
AKHW03000257.1: 131832-131927 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ami-mir-30c-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ami-miR-30c-5p

Accession MIMAT0038081
Description Alligator mississippiensis ami-miR-30c-5p mature miRNA
Sequence 21 - UGUAAACAUCCUACACUCUCAGC - 43
Evidence experimental
Illumina [1]

Mature ami-miR-30c-3p

Accession MIMAT0038082
Description Alligator mississippiensis ami-miR-30c-3p mature miRNA
Sequence 61 - UGGGAGAGGGUUGUUUACGCC - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196