miRBase entry: ami-mir-29b-1

Stem-loop ami-mir-29b-1

Accession

MI0029688

Description

Alligator mississippiensis ami-mir-29b-1 precursor miRNA

Sequence

cuccuucaggaagcUGGUUUCAUAUGGUGGUUUAGAuuuaacuacuuauugucUAGCACCAUUUGAAAUCAGUGuucuuggaggaagaau
.(((((((((((((((((((((.((((((..((((((.............)))))))))))).)))))))))).))))))))))).....

Structure

----c           -          U      GU      uuaac 
     uccuucaggaa gcUGGUUUCA AUGGUG  UUAGAu     u
     ||||||||||| |||||||||| ||||||  ||||||     a
     aggagguucuu UGACUAAAGU UACCAC  GAUcug     c
uaaga           G          U      --      uuauu

Annotation confidence Not enough data

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Genome context

AKHW03002440.1: 24298570-24298659 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ami-mir-29b-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ami-miR-29b-5p

Accession	MIMAT0038074
Description	Alligator mississippiensis ami-miR-29b-5p mature miRNA
Sequence	15 - UGGUUUCAUAUGGUGGUUUAGA - 36
Evidence	experimental Illumina [1]

Mature ami-miR-29b-3p

Accession	MIMAT0038075
Description	Alligator mississippiensis ami-miR-29b-3p mature miRNA
Sequence	54 - UAGCACCAUUUGAAAUCAGUG - 74
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196