miRBase entry: ami-mir-29a-2

Stem-loop ami-mir-29a-2


Accession
MI0029687
Description
Alligator mississippiensis ami-mir-29a-2 precursor miRNA


Sequence

ucucuuacacaggcUGACCGAUUUCUCUUGGUGUUCAGagucucaguguuugucUAGCACCAUUUGAAAUCGGUUAugauguaggggga
(((((((((((...(((((((((((...(((((((.(((.............))))))))))...))))))))))))).))))))))).

Structure
-         -  ggc           UCU       C   gucuc 
 ucucuuaca ca   UGACCGAUUUC   UGGUGUU AGa     a
 ||||||||| ||   |||||||||||   ||||||| |||     g
 gggggaugu gu   AUUGGCUAAAG   ACCACGA Ucu     u
a         a  ---           UUU       -   guuug 


Annotation confidence Not enough data
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Genome context
AKHW03006004.1: 1061826-1061914 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ami-mir-29a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ami-miR-29a-3p

Accession MIMAT0038072
Description Alligator mississippiensis ami-miR-29a-3p mature miRNA
Sequence 55 - UAGCACCAUUUGAAAUCGGUUA - 76
Evidence experimental
Illumina [1]

Mature ami-miR-29a-2-5p

Accession MIMAT0038073
Description Alligator mississippiensis ami-miR-29a-2-5p mature miRNA
Sequence 15 - UGACCGAUUUCUCUUGGUGUUCAG - 38
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196