Stem-loop sequence ami-mir-27b

Accession

MI0029685 (change log)

Description

Alligator mississippiensis miR-27b stem-loop

Stem-loop

   --   -    gaca                  auug        ---u  uu 
5'   ccu cucu    aggugcagagcuuagcug    gugaacag    ga  g
     ||| ||||    ||||||||||||||||||    ||||||||    ||   
3'   gga gaga    uccacgucuugaaucggu    cacuuguu    cu  a
   gu   a    --ag                  --ga        uccc  uu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (ASM28112v4; GCA_000281125.4): AKHW03006358.1: 16892732-16892827 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ami-mir-27b

• ami-mir-23b: AKHW03006358.1: 16892962-16893058 [-]
• ami-mir-27b: AKHW03006358.1: 16892732-16892827 [-]
• ami-mir-24-1: AKHW03006358.1: 16892164-16892255 [-]

Database links

• miRBase Tracker:MI0029685

Mature sequence ami-miR-27b-5p

• Accession: MIMAT0038069
• Sequence: 18 - agagcuuagcugauuggugaac - 39
• Evidence: experimental; Illumina [1]

Mature sequence ami-miR-27b-3p

• Accession: MIMAT0038070
• Sequence: 60 - uucacaguggcuaaguucug - 79
• Evidence: experimental; Illumina [1]

References

1. PMID:24798503 "Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles" Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ Evol Dev. 16:189-196(2014).