miRBase entry: ami-mir-24-1

Stem-loop ami-mir-24-1


Accession
MI0029680
Description
Alligator mississippiensis ami-mir-24-1 precursor miRNA


Sequence

uggauggacccguccuccAGUGCCUACUGAGCUGAUAUCAGUucugauuuuacauacUGGCUCAGUUCAGCAGGAACAGgagucgagcccca
(((..((.(.((..((((.((.(((.(((((((((..(((((..((......)).))))).))))))))).))).)).)))).)).))))))

Structure
   au  a c  uc    A  G   A         UA     uc  au 
ugg  gg c cg  cucc GU CCU CUGAGCUGA  UCAGU  ug  u
|||  || | ||  |||| || ||| |||||||||  |||||  ||   
acc  cc g gc  gagG CA GGA GACUUGACU  GGUca  ac  u
   --  - a  -u    A  A   C         -C     -u  au 


Annotation confidence Not enough data
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Genome context
AKHW03006358.1: 16892164-16892255 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ami-mir-24-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ami-miR-24-5p

Accession MIMAT0038061
Description Alligator mississippiensis ami-miR-24-5p mature miRNA
Sequence 19 - AGUGCCUACUGAGCUGAUAUCAGU - 42
Evidence experimental
Illumina [1]

Mature ami-miR-24-3p

Accession MIMAT0038062
Description Alligator mississippiensis ami-miR-24-3p mature miRNA
Sequence 58 - UGGCUCAGUUCAGCAGGAACAG - 79
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196