miRBase entry: ami-mir-23b

Stem-loop ami-mir-23b


Accession
MI0029679
Description
Alligator mississippiensis ami-mir-23b precursor miRNA


Sequence

cccaguguuguggcuguuuGGGUUCCUGGCAUGCUGAUUUgugacuuaaaauuaaaAUCACAUUGCCAGGGAUUACCACagagccaugaccauggcu
.(((..(((((((((.(.(((((((((((((((.((((((..............)))))))).))))))))))..))).).)))))))))..)))..

Structure
-c   gu         g u   --          -  C      gugacu 
  cca  guuguggcu u uGG  GUUCCUGGCA UG UGAUUU      u
  |||  ||||||||| | |||  |||||||||| || ||||||       
  ggu  caguaccga a ACC  UAGGGACCGU AC ACUAaa      a
uc   ac         g C   AU          U  -      auuaaa 


Annotation confidence Not enough data
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Genome context
AKHW03006358.1: 16892962-16893058 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ami-mir-23b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ami-miR-23b-5p

Accession MIMAT0038059
Description Alligator mississippiensis ami-miR-23b-5p mature miRNA
Sequence 20 - GGGUUCCUGGCAUGCUGAUUU - 40
Evidence experimental
Illumina [1]

Mature ami-miR-23b-3p

Accession MIMAT0038060
Description Alligator mississippiensis ami-miR-23b-3p mature miRNA
Sequence 57 - AUCACAUUGCCAGGGAUUACCAC - 79
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196