miRBase entry: ami-mir-21

Stem-loop ami-mir-21


Accession
MI0029677
Description
Alligator mississippiensis ami-mir-21 precursor miRNA


Sequence

ccauccugucggaUAGCUUAUCAGACUGAUGUUGACuguuggaugucauggCAACAACAGUCGGUAGGCUGUCugacauuuu
......((((((((((((((((.(((((.(((((.((((........))))))))).)))))))))))))))))))))....

Structure
ccaucc                A     A     A    ugg 
      ugucggaUAGCUUAUC GACUG UGUUG Cugu   a
      |||||||||||||||| ||||| ||||| ||||    
      acaguCUGUCGGAUGG CUGAC ACAAC ggua   u
--uuuu                -     A     -    cug 


Annotation confidence Not enough data
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Genome context
AKHW03004004.1: 13769088-13769169 [-]

Database links

Mature ami-miR-21-5p

Accession MIMAT0038056
Description Alligator mississippiensis ami-miR-21-5p mature miRNA
Sequence 14 - UAGCUUAUCAGACUGAUGUUGAC - 36
Evidence experimental
Illumina [1]

Mature ami-miR-21-3p

Accession MIMAT0038057
Description Alligator mississippiensis ami-miR-21-3p mature miRNA
Sequence 52 - CAACAACAGUCGGUAGGCUGUC - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196