miRBase entry: ami-mir-20a

Stem-loop ami-mir-20a


Accession
MI0029676
Description
Alligator mississippiensis ami-mir-20a precursor miRNA


Sequence

gcuccuguaguacUAAAGUGCUUAUAGUGCAGGUAGuguucaggaaucuACUGCAUUAUGAGCACUUAAAGUacugcuagc
(((...((((((((.(((((((((((((((((.(((...........))))))))))))))))))))..)))))))).)))

Structure
   ccu        -A                 G   uguu 
gcu   guaguacU  AAGUGCUUAUAGUGCAG UAG    c
|||   ||||||||  ||||||||||||||||| |||    a
cga   cgucaUGA  UUCACGAGUAUUACGUC Auc    g
   --u        AA                 -   uaag 


Annotation confidence Not enough data
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Genome context
AKHW03002195.1: 10810243-10810323 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from ami-mir-20a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ami-miR-20a-5p

Accession MIMAT0038054
Description Alligator mississippiensis ami-miR-20a-5p mature miRNA
Sequence 14 - UAAAGUGCUUAUAGUGCAGGUAG - 36
Evidence experimental
Illumina [1]

Mature ami-miR-20a-3p

Accession MIMAT0038055
Description Alligator mississippiensis ami-miR-20a-3p mature miRNA
Sequence 50 - ACUGCAUUAUGAGCACUUAAAGU - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196