miRBase entry: ami-mir-16a-2

Stem-loop ami-mir-16a-2


Accession
MI0029670
Description
Alligator mississippiensis ami-mir-16a-2 precursor miRNA


Sequence

cuauacuuguuccgcccUAGCAGCACGUAAAUAUUGGUGuauaaaaguaaaucaaaccCCAAUAUUAUUGUGCUGCUUAAgcguggcaga
......(((((.(((...(((((((((..((((((((.((...............)).))))))))..)))))))))...))).))))).

Structure
cuauac     c   ccU         UA        U  auaaaa 
      uuguu cgc   AGCAGCACG  AAUAUUGG Gu      g
      ||||| |||   |||||||||  |||||||| ||      u
      gacgg gcg   UCGUCGUGU  UUAUAACC ca      a
-----a     u   AAU         UA        c  aacuaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
AKHW03003627.1: 20725712-20725801 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ami-mir-16a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ami-miR-16a-5p

Accession MIMAT0038042
Description Alligator mississippiensis ami-miR-16a-5p mature miRNA
Sequence 18 - UAGCAGCACGUAAAUAUUGGUG - 39
Evidence experimental
Illumina [1]

Mature ami-miR-16a-2-3p

Accession MIMAT0038044
Description Alligator mississippiensis ami-miR-16a-2-3p mature miRNA
Sequence 59 - CCAAUAUUAUUGUGCUGCUUAA - 80
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196