miRBase entry: ami-mir-15b

Stem-loop ami-mir-15b


Accession
MI0029667
Description
Alligator mississippiensis ami-mir-15b precursor miRNA


Sequence

accuuaaauuacucUAGCAGCACAUCAUGGUUUGCAugaucuuguaaagaugCUAAUCAUUAUUUGCUGCUUUaggaauuuaagga
.((((((((..((..(((((((.((.((((((.((((............)))).)))))).)).)))))))..))..)))))))).

Structure
a        ua  cU       C  C      U    gaucu 
 ccuuaaau  cu  AGCAGCA AU AUGGUU GCAu     u
 ||||||||  ||  ||||||| || |||||| ||||      
 ggaauuua  ga  UCGUCGU UA UACUAA Cgua     g
a        ag  UU       U  U      U    gaaau 


Annotation confidence Not enough data
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Genome context
AKHW03003627.1: 20725548-20725633 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ami-mir-15b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ami-miR-15b-5p

Accession MIMAT0038038
Description Alligator mississippiensis ami-miR-15b-5p mature miRNA
Sequence 15 - UAGCAGCACAUCAUGGUUUGCA - 36
Evidence experimental
Illumina [1]

Mature ami-miR-15b-3p

Accession MIMAT0038039
Description Alligator mississippiensis ami-miR-15b-3p mature miRNA
Sequence 53 - CUAAUCAUUAUUUGCUGCUUU - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196