miRBase entry: ami-mir-7a-2

Stem-loop ami-mir-7a-2

Accession

MI0029656

Description

Alligator mississippiensis ami-mir-7a-2 precursor miRNA

Sequence

ccugacccuguaUGGAAGACUAGUGAUUUUGUUGUucuauggcucaucucacgaCAACAAGUCACAGUCUGCCUUauggugcauggccu
(((((((..(((.((.(((((.(((((((.((((((...(((......))).)))))))))))))))))).)).)))))).)).))...

Structure

---  -  -   cu   U  A     A       U      cua   cu 
   cc ug acc  gua GG AGACU GUGAUUU GUUGUu   ugg  c
   || || |||  ||| || ||||| ||||||| ||||||   |||   
   gg ac ugg  uaU CC UCUGA CACUGAA CAACag   acu  a
ucc  u  g   --   U  G     -       -      --c   cu

Annotation confidence Not enough data

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Genome context

AKHW03006295.1: 11914583-11914671 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ami-mir-7a-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ami-miR-7a-5p

Accession	MIMAT0038023
Description	Alligator mississippiensis ami-miR-7a-5p mature miRNA
Sequence	13 - UGGAAGACUAGUGAUUUUGUUGU - 35
Evidence	experimental Illumina [1]

Mature ami-miR-7a-2-3p

Accession	MIMAT0038025
Description	Alligator mississippiensis ami-miR-7a-2-3p mature miRNA
Sequence	55 - CAACAAGUCACAGUCUGCCUU - 75
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196