miRBase entry: ami-mir-1b

Stem-loop ami-mir-1b


Accession
MI0029654
Description
Alligator mississippiensis ami-mir-1b precursor miRNA


Sequence

ucccucccaacccUACAUACUUCUUCAUAUGCCCAuauggagucggcugguauuaUGGAAUGUUAAGAAGUAUGUAUcuuugggcugggac
((((.(((((...((((((((((((.((((..(((((...((....)).....))))).)))).))))))))))))...)))))..)))).

Structure
-    -u     ccc            C    GC     --ugg  u 
 uccc  cccaa   UACAUACUUCUU AUAU  CCAua     ag c
 ||||  |||||   |||||||||||| ||||  |||||     ||  
 aggg  ggguu   AUGUAUGAAGAA UGUA  GGUau     uc g
c    uc     ucU            U    -A     uaugg  g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
AKHW03000257.1: 2164083-2164173 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ami-mir-1b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ami-miR-1b-5p

Accession MIMAT0038021
Description Alligator mississippiensis ami-miR-1b-5p mature miRNA
Sequence 14 - UACAUACUUCUUCAUAUGCCCA - 35
Evidence experimental
Illumina [1]

Mature ami-miR-1b-3p

Accession MIMAT0038022
Description Alligator mississippiensis ami-miR-1b-3p mature miRNA
Sequence 56 - UGGAAUGUUAAGAAGUAUGUAU - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196