miRBase entry: ami-let-7f-2

Stem-loop ami-let-7f-2


Accession
MI0029649
Description
Alligator mississippiensis ami-let-7f-2 precursor miRNA


Sequence

uaucagagUGAGGUAGUAGAUUGUAUAGUugugggguaguuauuuuacccuguucaggagauaaCUAUACAAUCUAUUGCCUUCCcugagga
..((((.(.((((((((((((((((((((((((((((((.....))))))).........))))))))))))))))))))))).)))))...

Structure
-ua    a U                       ---------       u 
   ucag g GAGGUAGUAGAUUGUAUAGUugu         gggguag u
   |||| | |||||||||||||||||||||||         ||||||| a
   aguc C UUCCGUUAUCUAACAUAUCaaua         ucccauu u
agg    - C                       gaggacuug       u 


Annotation confidence Not enough data
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Genome context
AKHW03004488.1: 7299080-7299171 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ami-let-7f-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ami-let-7f-5p

Accession MIMAT0038012
Description Alligator mississippiensis ami-let-7f-5p mature miRNA
Sequence 9 - UGAGGUAGUAGAUUGUAUAGU - 29
Evidence experimental
Illumina [1]

Mature ami-let-7f-3p

Accession MIMAT0038013
Description Alligator mississippiensis ami-let-7f-3p mature miRNA
Sequence 65 - CUAUACAAUCUAUUGCCUUCC - 85
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196