Stem-loop ami-let-7f-1

Accession

MI0029648

Description

Alligator mississippiensis ami-let-7f-1 precursor miRNA

Sequence

ccgggcggcgugggcUGAGGUAGUAGAUUGUAUAGUucugggucacacccgcgcggagauaacuauacagccuacugucuuuccugcgcuguucccc
..((((((((((((..((((((((((.(((((((((((((.((.......)).))))....))))))))).)))))))))).))))))))))))...

Structure

-cc            cU          A         ----    g  ca 
   gggcggcguggg  GAGGUAGUAG UUGUAUAGU    ucug gu  c
   ||||||||||||  |||||||||| |||||||||    |||| ||  a
   cuugucgcgucc  uucugucauc gacauauca    aggc cg  c
ccc            -u          c         auag    g  cc 

Annotation confidence Not enough data

Genome context

AKHW03001570.1: 8030-8126 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ami-let-7f-1

Mature ami-let-7f-5p

• Accession: MIMAT0038012
• Description: Alligator mississippiensis ami-let-7f-5p mature miRNA
• Sequence: 16 - UGAGGUAGUAGAUUGUAUAGU - 36
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196